Index

10x Genomics Sample Preparation Products

• Chromium Nuclei Isolation Kit How-to Videos
• Chromium Nuclei Isolation Kit Sample Prep User Guide
• Chromium Nuclei Isolation Kit Tested Tissues

SDS

• Chromium Single Cell 5' Reagent Kits (v2 Chemistry Dual Index) Safety Data Sheets
• Chromium Next GEM Automated Single Cell 5' Reagent Kit v2 Safety Data Sheets
• Chromium Next GEM Automated Single Cell 5ʹ Reagent Kits Safety Data Sheets (v2 Dual Index Chemistry)
• Chromium Next GEM Single Cell 5’ HT Reagent Kits v2 Safety Data Sheets (HT v2 Dual Index Chemistry)
• Chromium Next GEM Single Cell HT Training Reagent Kits Safety Data Sheets
• Chromium Next GEM Training Kit Safety Data Sheets
• Chromium Nuclei Isolation Kit Safety Data Sheets
• Chromium Single Cell V(D)J Feature Barcode Library Reagent Kits Safety Data Sheets
• Chromium Single Cell V(D)J Reagent Kits Safety Data Sheets (v1.1 Chemistry)
• Chromium Training Kit Safety Data Sheets

Getting Started

• 5' CRISPR
• Automated Immune Profiling with Feature Barcode technology
• Getting Started: Single Cell Immune Profiling
• Immune Profiling Feature Barcoding
• Immune Profiling HT with Feature Barcode technology
• Immune Profiling HT with Feature Barcode technology
• Next GEM Technology for Single Cell Immune Profiling
• On-Demand Training for Single Cell Immune Profiling

User Guides

• Automated Gene Expression Library Construction
• Chromium Connect Document Resources
• Chromium Connect Quick Reference Cards
• Chromium Connect User Guide
• Chromium Controller Readiness Test
• Chromium Controller Readiness Test with Chromium Next GEM Test Chip
• Chromium Controller Training Kit
• Chromium Next GEM Automated Single Cell 5' cDNA Kit v2 User Guide Supplement
• Chromium Next GEM Automated Single Cell 5ʹ Reagent Kits User Guide (v2 Chemistry)
• Chromium Next GEM Automated Single Cell 5ʹ Reagent Kits v2 with Feature Barcode technology for Cell Surface Protein & Immune Receptor Mapping
• Chromium Next GEM Single Cell 5' HT Reagent Kits v2 (Dual Index)
• Chromium Next GEM Single Cell 5' HT Reagent Kits v2 (Dual Index) with Feature Barcode technology for CRISPR Screening
• Chromium Next GEM Single Cell 5' HT Reagent Kits v2 (Dual Index) with Feature Barcode technology for CRISPR Screening and Cell Surface Protein
• Chromium Next GEM Single Cell 5' HT Reagent Kits v2 (Dual Index) with Feature Barcode technology for Cell Surface Protein & Immune Receptor Mapping
• Chromium Next GEM Single Cell 5' Reagent Kits v2 (Dual Index) with Feature Barcode technology for CRISPR Screening
• Chromium Next GEM Single Cell 5' Reagent Kits v2 (Dual Index) with Feature Barcode technology for CRISPR Screening and Cell Surface Protein
• Chromium Next GEM Single Cell HT Training Reagent Kits User Guide
• Chromium Next GEM Training Kit User Guide
• Chromium Single Cell 5' Reagent Kits User Guide (v2 Chemistry Dual Index)
• Chromium Single Cell 5' Reagent Kits User Guide (v2 Chemistry Dual Index) with Feature Barcoding technology for Cell Surface Protein and Immune Receptor Mapping
• Chromium Single Cell Controller Readiness Test
• Chromium Single Cell V(D)J Reagent Kits (v1 Chemistry)
• Chromium Single Cell V(D)J Reagent Kits (v1.1 Chemistry)
• Chromium Single Cell V(D)J Reagent Kits User Guide (v1 Chemistry) with Feature Barcoding technology for Cell Surface Protein
• Chromium Single Cell V(D)J Reagent Kits User Guide (v1.1 Chemistry) with Feature Barcoding technology for Cell Surface Protein
• Chromium X Series (X/iX) Quick Reference Cards
• Chromium X Series (X/iX) User Guide with Readiness Test
• Flowcell Capacity Calculator

Technical Notes

• Base Composition of Sequencing Reads of Chromium Single Cell V(D)J Libraries
• Best Practices to Minimize Chromium Next GEM Chip Clogs and Wetting Failures
• Chromium Connect Automated Single Cell 5' v2 with Feature Barcode technology: Workflow and Data Overview
• Chromium Connect: Consistent Automated Single Cell 5' Gene Expression and V(D)J Library Generation
• Chromium Connect: Instructions for Bypassing Consumable Scanning
• Chromium Connect: Modular Gene Expression Workflow & Data Overview
• Chromium Next GEM Single Cell 5' HT v2: Reagents, Workflow & Data Overview
• Chromium Next GEM Single Cell 5' v2 (Dual Index): Reagent, Workflow & Performance Updates
• Chromium Next GEM Single Cell V(D)J v1.1: Reagent & Workflow Updates
• Chromium Single Cell Applications - Guidelines for Optimal Sample Preparation
• Chromium Single Cell CRISPR Screening – Experimental Planning Guide
• Chromium Single Cell V(D)J Libraries – Sequencing Metrics for Illumina® NovaSeq®
• Chromium Single Cell V(D)J Libraries – Sequencing Metrics for Illumina® Sequencers
• Chromium X Series: Network Connectivity Guidelines
• Chromium X Series: Single Cell Data Highlights and Comparisons
• Chromium™ Single Cell Applications
• Guidelines for Accurate Target Cell Counts Using 10x Genomics® Single Cell Solutions
• Importance of Cell Stock Concentration for Accurate Target Cell Recovery
• Instructions to Download and Process FASTQs of Chromium X Demonstration Data
• Interpreting Cell Ranger Web Summary Files for Single Cell Gene Expression Assays
• Interpreting Intronic and Antisense Reads in 10x Genomics Single Cell Gene Expression Data
• Interpreting Single Cell Gene Expression Data With and Without Intronic Reads
• Neutrophil Analysis in 10x Genomics Single Cell Gene Expression Assays
• Performance of Blood Collection Tubes and PBMC Isolation Methods for Single Cell Gene Expression
• Pipette Tip Recommendations for 10x Genomics Single Cell Protocols
• Quality Control of Cell Surface Protein Labeling using Flow Cytometry
• Removal of Dead Cells from Single Cell Suspensions Improves Performance for 10x Genomics® Single Cell Applications
• Resolving Cell Types as a Function of Read Depth and Cell Number
• Sequencing Metrics & Base Composition of Single Cell 5' v2 Dual Index Libraries
• Thermal Cycler Recommendations for 10x Genomics Single Cell and Spatial Protocols

Demonstrated Protocols

• Cell Labeling with dCODE Dextramer® for Single Cell RNA Sequencing Protocols
• Cell Surface Protein Labeling for Single Cell RNA Sequencing Protocols
• Enrichment of CD3+ T Cells from Dissociated Tissues for Single Cell RNA Sequencing and Immune Repertoire Profiling
• Fresh Frozen Human Peripheral Blood Mononuclear Cells for Single Cell RNA Sequencing
• Fresh Frozen Human-Mouse Cell Line Mixtures for Single Cell RNA Sequencing
• Immune Profiling HT Demonstrated Protocol Compatibility Table
• Isolation of Leukocytes, Bone Marrow and Peripheral Blood Mononuclear Cells for Single Cell RNA Sequencing
• Removal of Dead Cells from Single Cell Suspensions for Single Cell RNA Sequencing
• Single Cell Protocols - Cell Preparation Guide
• Single Cell Suspensions from Cultured Cell Lines for Single Cell RNA Sequencing
• Single Cell V(D)J Demonstrated Protocol Compatibility Table
• Thawing Dissociated Tumor Cells for Single Cell RNA Sequencing
• Tumor Dissociation for Single Cell RNA Sequencing

Specifications

• Chromium Connect Declaration of Conformity
• Chromium Connect Specifications
• Chromium Controller Declaration of Conformity
• Chromium Controller Specifications
• Chromium Single Cell Controller Specifications
• Chromium X Series (X/iX) Declaration of Conformity
• Chromium X Series (X/iX) Specifications
• Chromium X Series (X/iX) UKCA Declaration of Conformity
• Sample Index Sets for Single Cell Immune Profiling
• Sequencing Requirements for Immune Profiling HT
• Sequencing Requirements for Single Cell V(D)J

Instrument Softwares

• Chromium Connect Instrument Software Update Procedure
• Chromium Connect Software Release Note

Product Notifications

• Chromium Connect Product Notification
• Chromium Connect Product Notification: User Interface Screens
• Workflow Update for Chromium Next GEM Chip and Gasket Assembly

Firmware Upgrades

• Chromium Controller Firmware Release Note
• Chromium Controller Firmware Update Procedure
• Chromium X Series Firmware Release Note
• Chromium X Series Firmware Update Procedure

Software

• Overview
• System Requirements
• Downloads

Datasets

• Datasets