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- What is Cell Ranger?
What is Feature Barcoding?- Installation
- System Requirements
- Downloads
- Running Pipelines
- Generating FASTQs
- Specifying Input FASTQs
- Single-Sample Analysis
- Feature Barcoding Analysis
- Multi-Sample Aggregation
- Customized Reanalysis
- Map of the Pipeline
- Algorithms Overview
- Understanding Output
- Summary
- Analysis
- Matrices
- BAM
- Molecule Info
- CRISPR Outputs
- Antibody Outputs
- Metrics
- Downstream Analysis
- Using R
- Using Python
- Glossary of Terms
- Troubleshooting
10x Genomics
Chromium Single Cell Gene Expression
Cell Ranger3.0, printed on 12/22/2024
Feature Barcoding Overview
Feature Barcoding technology is a method for adding extra channels of information to cells by running single-cell gene expression in parallel with other assays. Look for the Feature Barcoding icon in the content menu at left for documentation specific to Feature Barcoding.
- For background on Feature Barcoding assay schemes see the Feature Barcoding Glossary
- To learn how to use Cell Ranger with Feature Barcoding data see Feature Barcoding Analysis
- To learn how to view Feature Barcoding data in Loupe Cell Browser, see the Feature Barcoding Tutorial
- To learn how to describe your Feature Barcoding reagents see Feature Barcoding Reference
- For resources for the wet-lab side of Feature Barcoding see Gene Expression Feature Barcoding