10x Genomics
Chromium Single Cell CNV
Cell Ranger DNA1.1 (latest), printed on 11/23/2024
What is Loupe scDNA Browser?
| Analysis software for the 10x Genomics single cell DNA product is no longer supported. Raw data processing pipelines and visualization tools are available for download and can be used for analyzing legacy data from 10x Genomics kits in accordance with our end user licensing agreement without support. |
Introduction
Loupe scDNA Browser is a desktop application for Windows and MacOS that allows you to visualize copy number information produced by analyzing Chromium™ Single Cell DNA data with the Cell Ranger DNA pipeline. You can use it to quickly evaluate copy number information at single-cell resolution. Loupe is named for a jeweler's loupe, which is used to inspect gems.
| 10x Chromium | Sequencer | 10x Cell Ranger DNA | 10x Loupe scDNA Browser | |
|---|---|---|---|---|
| Cell Suspension | Barcoding & Library Construction |
Sequence library | Pipelines | Analysis & Visualization |
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Within Loupe scDNA Browser, you will be able to quickly characterize genomic heterogeneity based on single cell copy number profiles, explore groups of cells with similar profiles, and zoom into regions of interest to evaluate copy number calls.
To find out how to use Loupe scDNA Browser to explore your copy number data, start the tutorial.
- 1.0
- Loupe scDNA Browser v1.1 (latest)