10x Genomics
Single Cell CNV

Cell Ranger DNA, printed on 11/12/2024

Release Notes for Loupe scDNA Browser 1.1

Loupe scDNA Browser 1.1.0 (2019-05-14)

• New features:

  • Add entries to the node legend for multisample cellranger-dna aggr runs.
  • Color-code and label leaf nodes with sample names enabling easy understanding of intermediate node composition.
  • For cellranger-dna reanalyze runs, allow labels to be searched from the node legend. Similarly, identify labeled nodes in the tree view.

• Additional changes:

  • Add a more prominent ploidy line.
  • Set the default display settings as 32 nodes with linear proportion.
  • Indicate noisy cells with an orange line leading to the node, instead of a red circle.
  • Set the confidence threshold to 4 for Cell Ranger DNA version 1.1 dloupe files. The old threshold is still used for dloupe files from Cell Ranger DNA version 1.0.