Interpreting Cell Ranger Web Summary Files for Single Cell Gene Expression Assays

Technical Note, Gene Expression, Last Modified on May 22, 2020, Permalink

CG000329_TechnicalNote_InterpretingCellRangerWebSummaryFiles_RevA.pdf

Technical Note - Interpreting Cell Ranger Web Summary Files for Single Cell Gene Expression Assays

The web summary file in the output folder of the Cell Ranger analysis software is the initial point of reference for determining sample performance in Single Cell Gene Expression assays. This Technical Note presents an overview of web summary file interpretation, including the expected metrics and characteristic plots for libraries generated using the Single Cell Gene Expression Solution.