10x Genomics
Fixed RNA Profiling
, printed on 12/22/2024
Chromium Mouse Transcriptome Probe Set v1.0.1
Probe set contents
- 19,405 genes targeted by 55,479 probes.
- 346 (1.8%) of these genes (targeted by 351 probes) are excluded by default due to predicted off-target activity to a different gene. See the probe filter section of the Cell Ranger algorithms overview for more details.
- 19,059 genes (targeted by 55,128 probes) are present in the final filtered output.
The gene_id information is included in the probe set reference CSV file.
Accompanying probe set files
- Chromium Mouse Transcriptome Probe Set v1.0.1 - Probe Set Reference CSV file
- Chromium Mouse Transcriptome Probe Set v1.0.1 - BED file
- Chromium Mouse Transcriptome Probe Set v1.0.1 - Probe Off-target CSV file
- Chromium Mouse Transcriptome Probe Set v1.0.1 - Metadata TSV file
These files can be downloaded from the software downloads section.
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Cell Ranger v7.1 is compatible with both the v1.0 and v1.0.1 probe set reference CSV files (new region column).
Cell Ranger v7.0/7.0.1 are compatible with the v1.0 probe set reference CSV files.
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For details on the file formats see the probe set file descriptions page.