Interpreting Space Ranger Web Summary Files for Visium Spatial Gene Expression for FFPE Assay

Technical Note, Last Modified on July 21, 2022, Permalink

CG000499_TechNote_InterpretingspaceRangerWebSummaryFiles_VisiumFFPE_RevA.pdf

The web summary file in the output folder of the Space Ranger analysis software is the initial point of reference for determining sample performance in the Visium Spatial Gene Expression for FFPE assay. This Technical Note presents an overview of web summary file interpretation, including the expected metrics and characteristic plots for libraries generated using the Visium Spatial Gene Expression for FFPE assay.