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10x Genomics
Single Cell Immune Profiling

SC_MULTI_CSBUILD_VDJ_OUTPUTS_CSFULL_COUNT_INPUTSWRITE_GENE_INDEXFULL_VDJ_INPUTSMULTI_PREFLIGHTMULTI_PREFLIGHT_LOCALPARSE_MULTI_CONFIGSC_MULTI_CORECOPY_VDJ_REFERENCECOUNT_ANALYZERSC_RNA_ANALYZERANALYZER_PREFLIGHTCHOOSE_DIMENSION_REDUCTIONCHOOSE_DIMENSION_REDUCTION_OUTPUTCOMBINE_CLUSTERINGCORRECT_CHEMISTRY_BATCHMERGE_CLUSTERSPREPROCESS_MATRIXRUN_DIFFERENTIAL_EXPRESSIONRUN_FBPCARUN_GRAPH_CLUSTERINGRUN_KMEANSRUN_MULTIGENOME_ANALYSISRUN_PCARUN_TSNERUN_UMAPSUMMARIZE_ANALYSIS_CRISPR_ANALYZERCALL_PROTOSPACERSSUMMARIZE_CRISPR_ANALYSIS_PERTURBATIONS_BY_FEATURE_PERTURBATIONS_BY_TARGETDISABLE_FEATURE_STAGESMAKE_FULL_CONFIG_MAKE_VDJ_CONFIGMULTI_CHEMISTRY_DETECTORCOMBINE_GEM_WELL_CHEMISTRIES_GEM_WELL_CHEMISTRY_DETECTORCHECK_BARCODES_COMPATIBILITYDETECT_COUNT_CHEMISTRYVDJ_CHEMISTRY_DETECTORCHECK_BARCODES_COMPATIBILITY_VDJDETECT_CHEMISTRYDETECT_VDJ_RECEPTORMULTI_GEM_WELL_PROCESSORCOUNT_GEM_WELL_PROCESSORMULTI_SETUP_CHUNKSPARSE_TARGET_FEATURES_BASIC_SC_RNA_COUNTERFILTER_BARCODESWRITE_POS_BAM_CELLS_REPORTERSUBSAMPLE_READSSUMMARIZE_BASIC_REPORTSWRITE_MOLECULE_INFO_MATRIX_COMPUTERALIGN_AND_COUNTBARCODE_CORRECTIONCOLLATE_METRICSMAKE_SHARDMERGE_METRICSSET_ALIGNER_SUBSAMPLE_RATEWRITE_BARCODE_SUMMARYWRITE_H5_MATRIXWRITE_MATRIX_MARKET_SLFE_PARTIAL_FIRST_PASSINITIAL_ALIGN_AND_COUNTSET_TARGETED_UMI_FILTERSUBSAMPLE_BARCODES_TARGETED_ANALYZERCALCULATE_TARGETED_METRICSSUBSAMPLE_OFF_TARGET_READSSUBSAMPLE_ON_TARGET_READSSUMMARIZE_TARGETED_ANALYSISVDJ_B_GEM_WELL_PROCESSORMULTI_SETUP_CHUNKSSC_VDJ_CONTIG_ASSEMBLERASSEMBLE_VDJBARCODE_CORRECTIONHANDLE_GEX_CELLSMAKE_SHARDMERGE_METRICSRUST_BRIDGEVDJ_T_GEM_WELL_PROCESSORMULTI_SETUP_CHUNKSSC_VDJ_CONTIG_ASSEMBLERASSEMBLE_VDJBARCODE_CORRECTIONHANDLE_GEX_CELLSMAKE_SHARDMERGE_METRICSRUST_BRIDGEMULTI_REPORTERBUILD_MULTI_WEB_SUMMARYCLOUPE_PREPROCESSSUMMARIZE_REPORTSVDJ_B_REPORTERREPORT_CONTIGSSUMMARIZE_VDJ_REPORTSVLOUPE_PREPROCESSWRITE_CONTIG_OUTSWRITE_CONTIG_PROTOVDJ_T_REPORTERREPORT_CONTIGSSUMMARIZE_VDJ_REPORTSVLOUPE_PREPROCESSWRITE_CONTIG_OUTSWRITE_CONTIG_PROTOSPLIT_VDJ_INPUTSVDJ_B_CLONOTYPE_ASSIGNERCLONOTYPE_ASSIGNERCREATE_AIRR_TSVFILL_CLONOTYPE_INFORUN_ENCLONEWRITE_ANN_CSVWRITE_CLONOTYPE_OUTSWRITE_CONCAT_REF_OUTSWRITE_CONSENSUS_BAMWRITE_CONSENSUS_TXTHANDLE_NO_VDJ_REFVDJ_T_CLONOTYPE_ASSIGNERCLONOTYPE_ASSIGNERCREATE_AIRR_TSVFILL_CLONOTYPE_INFORUN_ENCLONEWRITE_ANN_CSVWRITE_CLONOTYPE_OUTSWRITE_CONCAT_REF_OUTSWRITE_CONSENSUS_BAMWRITE_CONSENSUS_TXTHANDLE_NO_VDJ_REF
  SC_MULTI_CS

Sub-pipeline that calls the `SC_MULTI_CORE` for pipeline invocations.