HOME  ›   pipelines

10x Genomics
Single Cell ATAC

Cell Ranger ATAC , printed on 06/02/2025

SC_ATAC_AGGREGATOR_CSATAC_AGGR_PREFLIGHTATAC_AGGR_PREFLIGHT_LOCALCLOUPE_PREPROCESSCOPY_INPUT_OUTPUTCREATE_AGGR_WEBSUMMARYFILTER_PEAK_MATRIXGENERATE_PEAK_MATRIX_LIBRARY_AGGREGATORMERGE_ANALYSIS_METRICSNORMALIZE_LIBRARIESREGENERATE_ANALYSIS_METRICSSELECT_PEAKSSETUP_AGGR_SAMPLES_PEAK_CALLERCOUNT_CUT_SITESDETECT_PEAKS_SC_ATAC_ANALYZERANALYZER_PREFLIGHTCLUSTER_CELLSCOMBINE_CLUSTERINGPERFORM_DIFFERENTIAL_ANALYSISPROJECT_TSNEREDUCE_DIMENSIONSRUN_GRAPH_CLUSTERINGSUMMARIZE_ANALYSIS_PEAK_ANNOTATORANNOTATE_PEAKSCOMPUTE_GC_DISTRIBUTIONGENERATE_TF_MATRIXSCAN_MOTIFS
←  SC_ATAC_AGGREGATOR_CS

The Cell Ranger ATAC pipeline that aggregates data from multiple samples and libraries and produces joint downstream analysis and metrics on the aggregated data