Interpreting Cell Ranger ATAC Web Summary Files for Single Cell ATAC Assay

Technical Note, Last Modified on June 6, 2022, Permalink

CG000202_TechnicalNote_InterpretingCellRangerATACWebSummaryFiles_RevB.pdf

Technical Note - Interpreting Cell Ranger ATAC Web Summary Files for Single Cell ATAC Assay

The web summary file in the output folder of the Cell Ranger ATAC analysis software is the initial point of reference for determining sample performance in the Single Cell ATAC assay. This Technical Note presents an overview of web summary file interpretation, including the expected metrics and characteristic plots for libraries generated using the Single Cell ATAC workflow.

FOR USE WITH:

• Chromium Single Cell ATAC Library & Gel Bead Kit, 16 rxns PN-1000110
• Chromium Single Cell ATAC Library & Gel Bead Kit, 4 rxns PN-1000111
• Chromium Single Cell ATAC Chip E Kit, 48 rxn PN-1000082
• Chromium Single Cell ATAC Chip E Kit, 16 rxn PN-1000086
• Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit, 16 rxns PN-1000175
• Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit, 16 rxns PN-1000176
• Chromium Next GEM Chip H Single Cell Kit, 48 rxns PN-1000161
• Chromium Next GEM Chip H Single Cell Kit, 16 rxns PN-1000162
• Chromium i7 Multiplex Kit N, Set A, 96 rxn PN-1000084